Title

1 Introduction

We set up variables in Listing 1.

Listing 1: This the the caption for this code listing.

a = 1
b = a + 1

In this example: a = 1 and b = 2, or if you want to use math text: \(a = 1\) and \(b = 2\).

Math text can also be used for full equations:

\[ E = mc^2 \]

When you have finished reading this section, you can move onto the next section, which is called Section 2.

Note

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There are five types: note, tip, warning, caution, and important.

2 Further section

We will now¹ use the iris dataset², a sample of which is shown in Table 1.

Table 1: This is the first few rows of the iris dataset.

Sepal.Length	Sepal.Width	Petal.Length	Petal.Width	Species
5.1	3.5	1.4	0.2	setosa
4.9	3.0	1.4	0.2	setosa
4.7	3.2	1.3	0.2	setosa
4.6	3.1	1.5	0.2	setosa
5.0	3.6	1.4	0.2	setosa
5.4	3.9	1.7	0.4	setosa

The full dataset is plotted in Figure 1, with distributions shown in Figure 2 (which includes subplots Figure 2 (a) and Figure 2 (b)).

iris |>
  ggplot(aes(x = Sepal.Length, y = Sepal.Width)) +
  geom_point()

Figure 1: This is an example using the iris dataset.

For example purposes we use Quarto subfigures here, although this would be better as facets/small multiple plots.

iris |>
  ggplot(aes(x = Sepal.Length)) +
  geom_histogram(binwidth = 0.2)
iris |>
  ggplot(aes(x = Sepal.Width)) +
  geom_histogram(binwidth = 0.2)

(a) sepal length

(b) sepal width

Figure 2: This is the distribution of the variables.

3 Final section

We have some references (Zelenka et al. 2024).

4 Acknowledgments

These are the acknowledgements, a link to the Jean Golding Institute and its logo, with a caption but no figure numbering:

The JGI logo.

And with figure numbering as Figure 3:

Figure 3: The JGI logo.

References

Zelenka, Natalie R, Nina Di Cara, Kieren Sharma, Seeralan Sarvaharman, Jasdeep S Ghataora, Fabio Parmeggiani, Jeff Nivala, Zahraa S Abdallah, Lucia Marucci, and Thomas E Gorochowski. 2024. “Data hazards in synthetic biology.” Synthetic Biology, June, ysae010. https://doi.org/10.1093/synbio/ysae010.

Footnotes

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